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Header image: Laura Kloepper, Ph.D.

discussion

Conservation Technology Database

Dear Group Members, I work with the Global Wildlife Program which includes projects in 19 countries around Asia and Africa on combating illegal wildlife trade, reducing human-...

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Are you familiar with the Conservation Evidence database? https://www.conservationevidence.com/

It is a searchable database of conservation actions (including but not limited to technological solutions), categorised by effectiveness with relevant references. To me it sounds a lot like what you are looking for.

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WILDLABS Tech Hub: WWF PandaSat

WILDLABS Team
At the 2018 London Illegal Wildlife Trade Conference, we announced the WILDLABS Tech Hub, an accelerator programme created to support the development and scaling of groundbreaking technological solutions addressing the ...

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discussion

A community response to help support the Australian bushfire crisis

Hi all, The bushfire crisis in Australia is beyond words. I've been talking to a few Australian friends and WL community members @Rob+Appleby @JessieOliver etc trying...

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Hi all,

I've put together a short list (below) that I've pulled from the Slack channel related to long term and short term projects that were noted or posted.

It's clear that one need is to identify if a quarterly meeting (to see where various projects are vs start anything new) is needed, or that we see if anyone in the community is able fill a voluntary co-ordination role to check up on various projects. One thing at the back of my mind is to look at this from the perspective that if new fires start at scale what could we have in place, or how could we react. That may drive forward a few ideas and help us to focus on what we can do in the short term as there are plenty of project discussions around physical water feeders etc.

Here's what I got from the Slack channel;

Long term

- Work with Conservation Volunteers Australia to establish projects suitable for volunteers, especially things that can be done remotely, but also out in the field.

- Develop a small but skilled and experienced "brains trust" that can provide input for any environmental project / organisation which needs 'tech smarts' but doesn't have them in house.

Short term

- Australian Citizen Science Association - short term priorities are replacing lost nest boxes and getting more she-oaks in the ground. That has to start happening soon to be useful for the 2020 breeding season (the boxes, not the trees obviously).

- Continue to assess recovery program staff needs and the recovery team's priorities

- Zooniverse want to test ALA data sharing, using air quality data can involve remote volunteers without danger

- Setting up field cameras in burnt areas, to identify remaining wildlife or ferals (Zooniverse, ALA/DigiVol)

- Recording wildlife water point or feed locations and monitoring for maintenance, ie refills. (Kobo, other app?

- Setting up shelter tunnels in burnt areas - and recording locations, with possible addition of field cameras (Zooniverse, ALA/Digivol).

****

 

Hello everyone. I hope you're well and your friends and families are safe during the Covid-19 crisis. I know that many of us are out of sync during the shut downs around the world so it isn't the easiest of times to think back on the bush fires, but also at the back of mind is the recurrence again and the recovery still underway / getting ahead of time with solutions. There is however a new opportunity that has come to light. The Australian Government has opened an application form for a $100k - £1m grant, with the desc;

The Wildlife and Habitat Bushfire Recovery Program will provide funding to support the immediate survival and long-term recovery and resilience for fire-affected Australian animals, plants, ecological communities and other natural assets and their cultural values for Indigenous Australians.

This may be the opportunity we need to move forward and progress some of the ideas we all noted. We will need Oz group WildLABS orgs and contacts on the ground, but if feel you have the capacity at this time to support a submission and be a part of it, then get in touch.

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discussion

Webinar 11PST 3/20 - Deep Learning for Airborne Tree Detection

Hi all, I am part of a regular meetup group on Deep Learning for Environmental Remote Sensing that I think would be of interest to a wide audience. All are welcome. I happen to be...

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Thanks Ben. I'll see what I can do.

DeepForest docs are here.

https://deepforest.readthedocs.io/

 

Welcome to have a look. My experience is that individual trees cannot be distinguished in satellite imagery. The coarest resolution we've had success with is 0.3m. However, the deepforest weights may still useful as a starting location. If there are visible objects in your image that you want to detect, collecting a few hundred training data samples and retraining the model for 2-3 epochs could be useful. See the link for details. Happy to help, submit issues on the github repo is something isn't clear/doesn't work. Everything is in dev.

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Connecting to MBARI's Deep-Sea Instruments

MBARI
The Monterey Bay Aquarium Research Institute's MARS ocean observatory may someday make conducting deep-sea research more accessible and affordable thanks to Deep-Sea Connect, their new wireless system engineered to ...

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discussion

Protocols for IDing big batches of camera trap data

Hello Camera Trap Community, We are currently trying to get a batch of camera trap images IDed and have a small team of interns working through the camera trap IDs. Has anyone...

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Hi Morgan and Tim,

Thank you so much for these resources, I will go through these and get back to you with any questions.

Best,

Michelle

Hi Michelle,

I had a group of undergrads help me with a 40,000-image dataset a few years back. We used the TEAM network Wild.ID program, so each photo that was tagged indicated who tagged it. That was helpful for checking quality later on. For our common, unmistakeable species (e.g. whitetail deer), I didn't require a second identification, but for more challenging groups (foxes, mustelids), I would often have a second person review the ID, or do it myself. Later on, I had a student go through all the tagged images of a particular species (gray squirrel, etc.) and verify the first ID. I found that some of the undergrads were very reliable in their ability to ID the species, whereas some other students needed to have their work checked more meticulously. I later thought of the idea of building a training set of say, 100 photos, to have each student run through to get a sense for their familiarity with the species, but also their ability to handle the more tricky scenarios that come up often in camtrap datasets.

Most folks could only handle 1-1.5 hours of continuous tagging. I had a few enthusiasts who would go for 2 hours straight, but that was rare. We logged effort in a shared google spreadsheet, where the students noted the dataset they worked on, any issues that came up, and any individual images that needed a second check.

I also tried to set up a more ergonomic workstation for folks (multiple monitors raised up, ergonomic mouse, etc.). Since the motion is so repetetive, easy for folks to develop carpal tunnel syndrome.

If you are dealing with a much larger dataset, you might want to look into more sophisticated AI/automation methods, but for a smaller project, this was doable. If you have a university connection, you can often recruit folks through chapter groups of The Wildlife Society. Student are often eager to gain experience, although many don't stick with it once they find out how unglamorous it is!

Good luck!

-Andy

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discussion

Bipod suggestion

I am considering adding a bipod to my rifle this season. I have never used one and I need recommendations as to what the best options are. First, What height range should I be...

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discussion

Open, challenging dataset for audio classification

Hi! Do you know of an open audio dataset that could be used for audio classification? I am a part of a group of students doing the fast.ai deep learning course right now. I...

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Hi Radek, 

I'm sure others can help here, but check out our recent virtual meetup (it'll be posted here in about an hour), the speakers - particularly Dave Watson - shared open datasets that might be what you're looking for. 

Over on Twitter, Jesse Alston is collating a google sheet so that people can advertise data sets that grad students can use to finish theses. @arik 's reply here might be of particular interest: 'We have been recording 24/7 soundscapes in remote US locations like Yellowstone NP and rural central Wisconsin with multiple GPS synced recorders. Our goal is to study wolf and coyote vocalisations, but if anyone can make use of these data for their own studies, drop me a line!.'

Hope this helps!

Steph 

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discussion

Automated species detection from camera traps

Hello. I'm looking into the possibility to automatically identify species from camera traps. This is for work based in the Middle East, mainly the United Arab Emirates and...

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I see. Im interested and would like to help. I will need the images to train the network. As many as possible. 
if you dont have them yet, try to find similar images preferably of the same species. I will use them to test the performance of the detection.

I'm not familiar with camera traps, but there are a couple of options:

1) If the animals tend to cover most part of the image, then you can train a CNN classifier to distinguish between species (available with the keras-Tensorflow modules in Python)

2) If, however, the animals only cover a small part of the image (e.g. in the distance), it might be better to use an object detector (I've used YOLOv2 in the past for fish detection), which however is not that straightforward, especially with Python (I used MATLAB)

In any case, keras-Tensorflow classification with Python might be the most straightforward option for your goal. You should also certainly have a look at Google's Wildlife Insights platform which is specialized for species classification from camera trap images.

This can be done, happy to help :) But I think I need to understand the situation a little bit more.

Do you already have the data for training / inference? Do you have any example images with the species in them annotated? Say a still from the camera with a tiger and a csv file referencing that file and annotating that there is a tiger in the image?

Would you like someone to do the developing and training of the deep learning model for you? I work as an AI research engineer at the Earth Species project and I am also a part of a community of deep learning practitioners where we apply cutting edge research to various problems. Here you can check a little initiative I started a couple of days ago to teach people how to work with audio (there is a related forum thread but unfortunately it is in closed forums for the time being as it is associated with a course that is under way). My main point is this - if you have the data and would like someone to help you out on the modelling part, I can coordinate this.

 

Alternatively, if you cannot release the data, I can point you to materials that can get you started to carry out the work yourself.

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event

Webinar: Citizen Science Online

SciStarter
Join WILDLABS community member Dr. Meredith Palmer from Snapshot Safari and other researchers from various disciplines in SciStarter's webinar, Citizen Science Online! Speakers will celebrate this April's Citizen...

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WILDLABS Tech Hub: Poreprint

WILDLABS Team
At the 2018 London Illegal Wildlife Trade Conference, we announced the WILDLABS Tech Hub, an accelerator program created to support the development and scaling of groundbreaking technological solutions addressing the ...

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discussion

Prior work on Bird Flock identification

Hi there! We have a project underway called "Identi-Flock" which is an ambitious attempt to port our individual pollinator identification software, www.withymbe.info...

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Hi Andrew,

Dan here—I'm one of the authors of the TinyML book! I love your Withymbe project; I've previously done work involving embedded systems and insects, and it's interesting to hear about your plans for bird flocks.

As long as you have sufficient data, you should be able to identify different bird sounds and discern them from background noise. The TinyML book has a chapter that introduces the underlying techniques, and I'd also recommend taking a look at www.edgeimpulse.com - we've built a set of tools designed to make it easy to train these types of models.

We actually recently published a tutorial on Wildlabs about this very concept:

https://www.wildlabs.net/resources/case-studies/tutorial-train-tinyml-model-can-recognize-sounds-using-only-23-kb-ram

I'm always excited to learn about new applications; feel free to reach out if there's any way we can help. I'm [email protected].

Warmly,
Dan

Just guessing but I don't think it will make much of a difference, individual or flock.  The spectrogramme will look much the same, and I think that is used as the input vector to the CNN.  If so then I would expect the model will be quite tolerant of flock size.  Just spitballing here though.

Hi Harold!

 

Great to know you are in the domain. To be honest my analysis so far indicates that when conducting a DSP approach on the spectrum, smoothing via convolution becomes an issue? Basically, the raw spectrum is too jagged to match, so one convolves it to smooth it, but then one just gets a generic "noise"-shaped spectrum. I also have variances in sampled spectra from the same source recording? I am using an fs=44100 and a spectrum 0 - 64kHz initially, or though I tried to filter from 100 - 9k with little success?

My design outline is: I need to identify the presence of a flock of a certain species of avians, I need to know when the flock is not present, and I need to distinguish the presence of other flocks of birds, not to identify them, but they are sometimes similar in size and possibly, therefore, call range? A sort of "We - Not We" approach?

I am comparing the gestalt sound, not individual calls?

Plus: I am using a Rapsberry Pi for the Fog Node currently, but see that I can use my Arduino Uno for TinyML from the examples which use a Nano? I am interested in the power-saving, but need a robust microphone rig, which I currently get via usb?

I will checkout your tutorial, many thanks!

Tally ho!

Andrew.

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event

Online Workshop: Conservation Technology

Hack the Poacher
On Friday, March 27th, meet the Hack the Poacher team in this free online webinar to discuss the latest innovations in conservation technology. This interactive event offers the opportunity to make connections in the...

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discussion

Technology Showroom of Artificial Intelligence (AI) aided Elephant Early Warning Systems

Hello, I’m in the process of setting up a Technology Showroom in Classic Village, Pannimadai, Coimbatore, South India,  highlighting the various types of Artificial...

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Hi @Tim+Vedanayagam 

Thank you for posting this. I'd be happy to contribute to the thermal sensing work under way. Can you confirm - have you built a thermal AI model and trained / labelled data for a particular camera?

We have been training a model for low cost (Lepton 3.5) thermal cameras via a challenge with WWF / Wildlabs and have 30,000 labelled images as our training dataset of Asian elephants. We're focusing on Deeplabel and YOLO with a plan to port to Tensorflow and it will be open source, so applicable for others to use and adopt in their early warning systems that use thermal.

More info here - https://www.zsl.org/blogs/conservation/zsl-whipsnade-zoo-becomes-a-space-for-high-tech-wild-elephant-conservation

Kind regards,

Alasdair

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discussion

Machine learning fish monitoring and the seafood sector

Hi all, Here at FFI, we've had some interest from seafood and aquaculture sector contacts in Google X's recently launched Tidal project and the whole camera-based,...

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Do the people approaching you have defined porblem statements or use cases? That's been one of the biggest challenges in scaling high-tech fisheries monitoring from either the public or private side. Unless there's a mandate to use it (which there is in Australia and the EU) the ROI is usually too low for individuals or companies to invest in it, and the potential markets are too small. Check out this CEA/TNC report for more scoping. http://tnc.org/emreport

Thanks Kate - that's really helpful. The company in question are investors in an emerging high-end aquaculture venture and I assume their interest is around utilising individual fish tracking to drive greater efficiency i.e. to adjust feed inputs, estimate growth rates, detect disease etc. all of which seems to be the intention of the Tidal Project. I'll get back to them with more questions and make some onward connections. If anyone else in the community has any linkages - please drop me a line on here!

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Enter the Zooniverse: Try Citizen Science for Yourself!

Ellie Warren
Trapped inside during the COVID-19 quarantine and looking to engage with conservation science without leaving your desk? Citizen science projects like those on Zooniverse offer a great opportunity to impact scientific...

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