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Header image: Laura Kloepper, Ph.D.

discussion

Advice for an in-situ Audio-Visual system for recording at a nest site

I'm looking for a cost-effective solution to a remote in-situ audio-visual system for bird acoustics for use in a PhD Project. I need an audio-visual setup suitable...

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Hello Carlos and Sam
That book on "CCTV for Wildlife Monitoring" looks excellent. Although it is somewhat off at a tangent of my actual work this looks way too useful not to have. There are cheaper second-hand copies on Abebooks and eBay and also on sale at NHBS, £20.98 incl. UK P&P (https://www.nhbs.com/cctv-for-wildlife-monitoring-book).

An interesting interview with the author, Susan Young: https://blog.nhbs.com/author-interviews/interview/cctv-for-wildlife-monitoring-an-interview-with-susan-young/

Meanwhile, I have come across a research project by the author of that book using technology that looks very close to what Sam is trying to do: "CCTV Enables the Discovery of New Barbastelle Vocalisations and Activity Patterns Near a Roost - We monitored a barbastelle maternity roost for four months using a portable CCTV system, time synchronised with ultrasound recorders."
See more here: https://www.researchgate.net/project/Using-CCTV-to-link-vocal-repertoire-with-behaviour-in-bats

If the above does not do it, I think you should contact the author and get her advice on what would be a suitable setup for you. That's what I meant in my earlier post about maximising use of previously developed solutions. It will just save you a lot of messing about, especially if you are not a technical expert yourself.

I hope this is of some use. Do post an update when you have worked out what equipment to use.

Good luck,
Joachim Neff

Hello Sam

I have now received the book on "CCTV for Wildlife Monitoring" (see my earlier post for more details) and it is as excellent as it looked online. If you can spare £21 then I would suggest you get a copy yourself.

The book is written for those without much technical background and the case studies are very detailed with equipment lists and setup details. I have not read the entire book but as far as I can see there are no examples described specifically with synced audio. However, all the case studies and detailed comments on what to watch out for (pun intended) should give you a lot of help in working out what you need for your project.

Good luck,
Joachim

Joachim and Carlos,

Thank you both very much for all your help so far with this problem, all of your input is very constructive. I have had look into the CCTV tech and also that researchgate link, and both have provided me with a few more options. At the moment I am organising a visit to one of the "hackerspaces" near me, to see if anyone can give me some hands-on practical advice, mainly about a suitable power supply solution (as lots of inputs running and recording continuously will reduce the time it can be in-field substantially based upon a standard, small size power supply, as I understand it). I will let you both know when I have managed to develop a prototype, but this may take a month or two as I need to first order a starter kit for Raspberry Pi or Arduino, get my head around the basics, and also contend with my other work. I will be sure to let you all know if I make any headway!

Best wishes, 

Sam

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discussion

Real-time audio monitoring

I am looking for a way to monitor audio in real time instead of writing to an SD card, which means the system gaterhing data needs to stream data back when it is recorded. What...

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Hi,

What you're asking, is it conceptually like turning on the mic on your PC and doing something with the output from the sound card?  Instead of digitising the sound it's possible to do some kind of monitoring in the analogue domain.  It sounds like an interesting problem, tell me more!

Thanks.

What frequecy are you looking to record, how long does the mic need to run for, what is the distance between the microphone and the "listening" site?   As (unless I've missed something) an off the shelf radio microphone does exactly that job.

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discussion

SCB ICCB 2019 - travel awards open now

Hey everyone,  Quick reminder that SCB ICCB 2019 abstracts are due Monday.  In partnership with the SCB Conservation Tech Working Group, we're organising a lot...

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ICCB 2019 Travel Reimbursement Awards – Applications Open

The deadline to submit an application for ICCB 2019 Travel Awards is 15 March at 11:59 p.m US Eastern Standard Time. All applications must be submitted online.

ICCB Travel Awards will help off-set some of the awardees’ expenses to attend SCB's 29th International Congress for Conservation Biology (ICCB 2019) in Kuala Lumpur, Malaysia from 21-25 July 2019.

The availability of travel reimbursement funds is determined by the amount of money raised through sponsorships and the amount provided to the awardees will vary based on location, need, and priority status.

Applicants need to meet one of the following essential required applicant type:

Full-time graduate (Master or PhD level equally considered), or undergraduate, students currently enrolled at a university based in a developing country (this criterion applies regardless of citizenship). Priority will be given to graduate students over undergraduate students based on a 70/30 ratio.

Early career researchers based in a developing country and whose salary does not come directly from sources in developed countries.  This criterion applies regardless of your country of citizenship. An early career researcher is anyone employed and conducting research within three years of having completed a Masters or a PhD degree.

Staff from NGOs based full-time in a developing country. Priority will be given to those travelling internationally on a 70/30 ratio.

To apply for travel awards please click here

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discussion

Conserving the Sumatran and Javan Rhino

Save Indonesian Endangered Species (SIES) will be building a machine to identify individual Indonesian rhino.  This will be challenging due to low data numbers.... Sumatran...

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Hello Claire, 

Engineer at Wild Me here. We would love to start a conversation about a Wildbook for rhinos. 

Lets talk about citizen science and computer vision for identification possibilities. I'm curious about your current data set and the identification tools you are using as a starting point. I'm happy to talk here, or you can email our team at [email protected].

Hi Claire,

At the BearID Project, we are working on a similar problem for brown bears. We are currently using machine learning methods developed for human facial recognition (like Google FaceNet). We got some ok initial results, but now we are running up against small data issues. The method for human faces were trained with millions of images of hundreds of thousandes on individuals. We have a few thousand images of about a hundred individuals. We plan to investigate other methods in the future.

It will be great to keep in touch to see what methods you will be using.

Ed

Hi Colin,

At the BearID Project, we are working on a similar problem for brown bears. We are currently using machine learning methods developed for human facial recognition (like Google FaceNet). We got some ok initial results, but now we are running up against small data issues. The method for human faces were trained with millions of images of hundreds of thousandes on individuals. We have a few thousand images of about a hundred individuals. We plan to investigate other methods in the future.

The last time I talked to WildMe, the identification algorithms were based on matching unique patterns. We didn't think this would be directly applicable for brown bears as they don't have a lot of clearly identifiable markings. Have you developed other identification algorithms?

Ed

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discussion

AudioMoth - Big data software?

What are other people using to shift through AudioMoth files to pull out the bats calls - so far I've settled on BatClassify.   If seems to cope with corrupt/zero...

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AH, okay. Yes, if something goes wrong writing to the SD card during a recording, the file won't be closed, and so the file size won't be updated. Let us know if you get any zero length files in †he future since it shouldn't happend. We have another release of the firmware and configuration app coming out in a couple of weeks that makes the routine which writes to the SD card a bit more robust if something goes wrong, uses human readible long file names, and also adds local time to both the configuration app and the resulting time stamps. Alex

Hi David,

Kate Jones suggested trying our their Bat Classifier tool - deep learning tools for bat acoustic signal detection. We've quite a few members here who worked on it if you've got questions (@Rory_Gibb, @snewson, @robin_freeman as a start)

We have a method for finding bat calls that is super quick, free and all code is open source https://t.co/52FPZHLyQU

— Kate Jones (@ProfKateJones) December 21, 2018

Steph

How about using Kaleidoscope and the cluster analysis tool?  Works fine, and is super-quick..

Ta, Carlos

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discussion

Upcoming tech4wildlife gatherings

Hi All, I'm looking for upcoming tech4wildlife conferences, workshops and gatherins during 2019 espeically in London, Glasgow and Bristol, but also interested beyond that...

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Hi Vance

We are organising a Conservation and Technology Conference to take place at the University of Nottingham on Friday 6 September 2019. https://www.bats.org.uk/our-work/conferences-symposia/conservation-and-technology-conference

This one day conference will explore conservation and technology for all wildlife (not just bats!)
It aims to:
- bring together wildlife conservationists, ecological consultants, researchers and technology experts to network and share knowledge/products/techniques.
- showcase new technologies, new applications of existing technologies and new developments in best practice
The programme will be talks-based and feature a mix of talk lengths, including some lightning talks to showcase new technologies, longer talks for projects/technologies where there are more results to discuss and a key note talk – speaker to be confirmed soon.
The Programme Selection Team would like to invite the submission of abstracts, particularly for projects using new technologies to support wildlife conservation or projects using existing technologies in new ways for conservation. We are keen to develop a diverse programme, featuring speakers working with a range of wildlife and technologies.
Abstracts should be submitted as a Word or pdf document and emailed to me: [email protected] by 15 March 2019 with the title Conservation and Technology Conference Abstract Submission.
There will also be posters on display at the Conservation and Technology Conference, please email mewith a short abstract or brief overview of the project/topic you would like to present a poster on: [email protected]
Please do share this with any friends or colleagues that you think might be interested or drop me an email with any questions, suggestions of speakers or projects you think might be interested or if you'd like to register your interest in the event. 

Best wishes

Naomi

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discussion

Responsible AI for Conservation?

AI is booming in conservation, with almost daily news articles on how it will solve problem X with algorithm Y. Indeed, there's huge potential here. But, as the old adage goes...

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Hi Jaishanker

Absolutely - the overlap between image-based and sound-based analyses is increasing, and consistent terminology will no doubt help us share info. 

Are you using ML in SODA for automated identification of sounds? If so, how are you determining if a given classifier is performing well? 

Thanks
Ollie

Hello Ollie,

SODA is a recently launched suite. It is in the development phase. We have with us call libraries with multiple (40+) calls for 10- 12 species of birds. A research scholar is on the job for classifying at the species level.

Our interest is equally on separating the different sonic components (as stated in https://www.wildlabs.net/community/thread/666). It is different from the link shared in my previous reply. This is where I see the confluence of objectives.

As a TEAM, I believe, we can address the individual objectives faster.

regards

jaishanker

 

Hi Ollie, 

Great article, thank you!  I mostly work with responsible AI in other contexts, at Doteveryone.org.uk and the Trust & Technology Initiative at the University of Cambridge, so don't have much to offer here, although I am very interested in the topic.  I appreciate your point that many of the consumer data issues highlighted in the 'popular' responsible AI discourse aren't relevant to conservation (some of us have been gathering 'responsible tech' / 'ethical tech' resources in a shared doc, and there's essentially nothing there for conservation specifically - https://docs.google.com/document/d/1SN6hYeKe3eRK6x9D0Sr7GpCA4nirpyo3u68xG1A6NDs/edit ). However there might be some links with humanitarian data practices, which are touched on by the Responsible Data folks at https://responsibledata.io and https://www.fabriders.net/data-literacy-consortium/ or in this recent article https://asecondmouse.wordpress.com/2019/02/20/instability-forecasting-models-seven-ethical-considerations/

Best, 

Laura

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discussion

The OpenCollar Initiative

We're incredibly excited to kickstart the OpenCollar initiative. If you haven't seen it yet, check out opencollar.io OpenCollar is a conservation collaboration...

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discussion

we seek Beta-testers for our new platform for wildlife intelligence

Sensing Clues Foundation is introducing an innovative Platform for Wildlife Intelligence, enabling rangers to create timely and actionable information for wildlife protection...

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Excellent, that good to hear.

No, I didn't have anyone in particular in mind, it's just helpful to have that info in the back of my mind as I talk to different people/projects. I was also wondering whether to include the invite in our next Digest which will be coming out tomorrow, and based on this response I'll pop it in there :) 

Congratulations! This looks like great tech.

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discussion

AudioMoth v1.1 is now available

Hi everyone, The Arribada Initiative has started a new GroupGets round (23rd Jan) for the updated v1.1 AudioMoth. It will run for the next 30 days, so get in on this round if...

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Quick update

This audiomoth group purchase is now 581% funded. To meet with demand and component stock, if they reach 1500 devices they will close this round early and start to manufacture. A new round additional round will be opened at the same time in this eventuality. 

As of this morning, this means htere are 338 devices left if you want to be included in this manufacturing run of the updated Audiomoth (v1.1).  

Update

The current AudioMoth group purchase reached our stock level of 1550 devices, hence the campaign has closed early. We'll now set up the manufacturing run and update you shortly on our progress.

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discussion

Eye on Earth Symposium Online: All 36 sessions will be webcast globally

Hi all, Just to share that this symposium will be available online and most of the sessions are very interesting to willdlabs community. You can check the program here:...

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Following the successful Eye on Earth Symposium at the end of October, the team has announced that video recordings of all 35 sessions are now available.

They've also shared a recording of the Global Environmental Education Partnership webinar: http://bit.ly/EoeWebinars 

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discussion

Tech Hub open call: Tech to end wildlife crime

Hey all, We're very excited today to open applications for the WILDLABS Tech Hub. The Tech Hub will offer a 3 month programme to support tech for wildlife...

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Hello Nik
I am still very much learning about startups and building a business but the bottom line is: whatever your product or service, there need to be customers for it who are happy to pay the price you ask for. This is one of the details you have to think about thoroughly when writing a business plan. This in turn forces you to really understand your customer and their particular needs so that you can make sure your product or service is meeting these - not just your own ideas of what a great product should look like.
It does not matter whether you are selling to the public, private or third sector, whether it is a luxury item or something to "improve the public good". Your product/service needs to be affordable by the user and do the job they require it to do. The business plan forces you to work out these details.

To many engineers like myself this kind of work compares poorly to working on the tech side of a soution. But it is a VERY useful exercise and it can actually be fun once you get into it. Having said that, the infamous business plan is also often a document that is created at great effort for someone else (like a funding provider) and then filed, forgotten and never updated. A wasted effort really.
To get started try something much more visual like drawing up a 'Business Model Canvas' and 'Value Proposition Canvas' (see https://www.strategyzer.com/ ). Consider it a precursor to the business plan and "something you can pin on your office wall" to keep it updated more easily. There are plenty of useful short tutorials on the above website (just need to register for free) to explain the concept. It is making a lot of sense and I found it very useful in getting the business basics sorted out.

Good luck,
Joachim

Thanks for the wonderful answer to Nik's query, Joachim! I think you covered everything, but to put a cap on it: for our good to make a long term impact, it has to survive the long term. That means we'll have to have a plan for long-term sustainability. That doesn't necessarily mean selling expensive licenses, but it does mean knowing your costs, and having an idea of how you'll offset them. Hence a business plan.

 

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discussion

Call for ideas & feedback

Hi forum, I am writing to ask the group what are the most pressing challenges they have that could potentially be solved by technology. I am a technologist, but also have...

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It certainly is. Whatever gets the job done and makes it easier for us to find the animals and prosecute the poachers. Also interested in thermal-imaging hardware and perhaps radar. I'm new to them all.

Hello Sean
If you want to get hands-on with thermal imaging hardware then you may be interested to know that this type of technology has dramatically reduced in price in recent years. IR cameras used to costs thousands (€, £, $) but can now be had for around US$500. See here for the FLIR C2: https://www.flir.com/products/c2/

I bought one of these a couple of years ago for building inspections etc. I would expect it to show very clearly any captured animals as long as they are alive. Having said that, you need ideally a good difference in temperature between object of interest and surrounding area. From my time in Taiwan I would expect that for some part of the year you won't get much contrast. Worth trying anyway. This would, of course, be a rather manual solution to finding captured animals.

In theory, you would be able to pick up metal objects with this, too, even if they are at the same temperature as their surroundings. Bare metals (i.e. not covered in something like paint) have a very different "thermal signature" (technically known as "emissivity") from many other materials. This means they usually appear much cooler in a thermal image than they actually are. The reason you are unlikely to pick this up with a basic IR camera is quite simply the low resolution of such cameras. The FLIR C2 has 60x80 pixels. Much more expensive cameras are better on this point but you would still have to watch very carefully to pick up a thin wire that would only be a few pixel wide at the most.

It may be worthwhile getting in touch with FLIR directly to see what ideas they have. I would not be surprised if they have a base in Taiwan.

Good luck,
Joachim

Hello Sean
I just had another thought: industrial machine vision systems come with all sorts of image inspection tools including such things as "edge detection". I wonder if this could be used in conjunction with a normal (not thermal) high resolution digital camera.

The general idea would be to:
1. take photos whilst on the move through a snare-infested area where a high res camera would be able to pick up a thin wire loop with sufficient resolution to make it visible;
2. let attached computer with vision software analyse images instantly for straight or looped edges that would indicate a snare.

What could help considerably is to take pictures in subdued natural light, maybe at dusk or dawn using a strong flash, possibly not just the built in flash of the camera but an external one. On the assumption that most snares are made from plain "shiny" metal, they should show up fairly well as "bright highlights" against the otherwise fairly dull (in terms of specular reflection) undergrowth. It would get more difficult though if the foilage was covered in water droplets as these would reflect the flash light, too.

I admit this is an idea that just sprung to mind and I have no idea how well this may work in practice. If you want to have a go yourself, set up a typical "snare scenario" and take some high resolution photos as described above from a few metres away. Then use free vision system software to process the images on your computer and see what you can find. Try this one, for example, https://www.teledynedalsa.com/en/products/imaging/vision-software/sherlock/

I have used it some years ago (for an industrial application) and found it very useful on early trials as it allows you to use all features processing images from a local folder rather than a live camera. This would be all you need to test whether there is any merit in this.

Sorry if industrial vision applications are not within your skill set but I thought I mention it here in case someone else wants to investigate it. I am not exactly twiddling thumbs otherwise I would be seriously tempted to have a look at this myself (pun intended:)).

Let me know if you need some more input on this,
Joachim

P.S.: A rough calculation on camera resolution:
- snare wire diameter is, say, 3 mm
- target size in image of the wire is at least 6 pixels (to reliably show diagonal edges)
- 20 Megapixel camera image is about 5000 pixel wide
- then you could cover an area 2.5 m wide per image (5000 / 6 * 3)
> this may be a workable distance to cover per image.
 

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