article / 31 May 2026

Assessing Critical Habitats Using Environmental DNA to Conserve the World’s Rarest Heron- White-bellied Heron Ardea insignis

The White-bellied Heron (Ardea insignis) is the world's rarest heron, with only about 60 individuals remaining globally. Bhutan holds nearly half of the remaining population, making conservation efforts within the country crucial to the species' survival. As part of my PhD research at Texas State University, I have been working to better understand the ecology, habitat suitability, and conservation needs of this critically endangered species. I employ an interdisciplinary approach that integrates field ecology, environmental DNA (eDNA) and portable genomics technologies to improve biodiversity monitoring and conservation planning for White-bellied Heron in Bhutan. Unlike traditional monitoring approaches that rely solely on direct observations, eDNA allows researchers to detect biodiversity from traces of genetic material left behind in the environment. The WILDLABS Award provided an exciting opportunity not only to advance research but also to demonstrate how emerging conservation technologies can be applied in remote landscapes while building local capacity for conservation genetics. Through this project, we sought to explore how portable molecular tools can support conservation decision-making while making advanced genetic technologies more accessible to researchers and practitioners in Bhutan.

 

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Photo 01: Pema conducting eDNA sampling at Drangmechhu’s lower stretch, one of the potential WBHE habitats.

Our Journey Through the Grant Period

Before heading into the field, we assembled and tested a portable eDNA sampling system and laboratory workflow. This preparation was essential because much of our work would take place in remote river valleys where access to conventional laboratory facilities is limited.

Photo 02: Pema conducting eDNA sampling at Drangmech's lower stretch, one of the potential WBHE habitats.

Over the course of the project, we surveyed multiple river systems across Bhutan, including known and potential White-bellied Heron habitats. Water and soil samples were collected to capture environmental DNA, while additional habitat information, including water quality parameters, was also recorded. These data will contribute to a better understanding of habitat conditions and biodiversity associated with White-bellied Heron river systems.

Fieldwork often involved long travel days, difficult terrain, and working in isolated locations. Despite these challenges, the experience provided an invaluable opportunity to explore some of Bhutan's most important river ecosystems and engage directly with local communities living alongside these habitats.

One particularly memorable moment was observing an active White-bellied Heron nest in Tsirang. Seeing an adult bird incubating eggs served as a powerful reminder of why protecting these habitats remains so important for the species' survival and recovery from the brink of extinction.       

Community engagement also became an important component of the project. Conversations with local residents provided valuable perspectives on changes occurring within river ecosystems and offered insights into historical White-bellied Heron presence in several areas. These interactions highlighted the importance of combining scientific research with local knowledge to better understand conservation challenges and opportunities.

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Photo 03: Meeting with community members along Phochhu, one of the protected and pristine habitats of WBHE, revealed a concerning situation. It appears that WBHE has been locally extirpated from this region due to the increasing human disturbances, including river rafting, logging and construction.
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Photo 04: Karna Dai who is the one of the project's team members and his family at their resident while we actively collect eDNA samples from water along the nearby river system.

Achievements and Outcomes

Several important outcomes emerged from this project:

Environmental DNA Surveys

We successfully completed environmental DNA sampling across multiple White-bellied Heron river systems, generating a valuable baseline dataset for future biodiversity monitoring efforts. The project established field and laboratory protocols that can be adapted for broader biodiversity assessments and future conservation applications.

Photo 05: A snapshot of our routine eDNA fieldwork, exploring the current and potential habitats of the White-bellied Heron

Portable Sequencing Demonstrated

The project successfully demonstrated the use of portable molecular technologies (Bento Lab and ONT's Minion sequencer) for conservation applications in Bhutan, from field sampling through DNA sequencing and bioinformatics analysis. This highlights the potential of portable genomics to support conservation research in remote and resource-limited settings.

Photo 06: Library preparation and real time genetic sequencing using Minion (Oxford Nanopore Technologies) 

Capacity Building

Approximately 20 students and faculty members from forestry, biotechnology, and animal sciences received practical training in molecular ecology and biodiversity monitoring techniques. Participants gained hands-on experience with modern genetic tools and were exposed to the full workflow from sample collection to DNA-based biodiversity assessment.

Photo 07: From sample to insights training and workshop session

Bird Sex Identification

We also demonstrated genetic sex identification using feather-derived DNA. This application is particularly relevant for White-bellied Herons because males and females are visually indistinguishable, and genetic techniques provide a reliable method for sex determination. Such information can be valuable for conservation management and captive breeding efforts.

Photo 8 & 9: Sex Identification of Bird Samples by PCR Amplification of CHD1-Z and CHD1-W Genes from Feather Calamus DNA Using Touchdown PCR

Conservation Awareness and Outreach

As part of the broader conservation effort, a conservation awareness programme was conducted for science students at Dechencholing Higher Secondary School in Thimphu. The session introduced students to the ecology and conservation challenges facing the Critically Endangered White-bellied Heron and highlighted our current and future efforts to support biodiversity and nature conservation. We also hope the programme inspired the younger generation to become active stewards of wildlife and the natural environment.

Photo 10 & 11: Conservation awareness and education programme in Dechencholing Higher Secondary School, Thimphu

Collaboration

This work would not have been possible without the support of strong collaborations and partnerships.

We are deeply grateful to colleagues and students at the CNR Bio Fab Lab, the College of Natural Resources, Texas State University, and Royal Society for the Protection of Nature who contributed their expertise, enthusiasm, and support throughout the project.

Equally important were the local communities who shared their knowledge, welcomed us into their villages, and helped us better understand the landscapes that support White-bellied Herons and other wildlife. Their observations and experiences provided valuable context for our fieldwork and reinforced the importance of community engagement in conservation.

Acknowledgements

This project was funded by Arm through the WILDLABS Awards and the Boring Fund. Additional support for complementary White-bellied Heron conservation activities was provided through the Rufford Booster Grant. We thank the College of Natural Resources, CNR Bio Fab Lab, Texas State University, conservation practitioners, students, local communities, and all collaborators who contributed to this work.

For a species as rare as the White-bellied Heron, effective conservation depends on combining science, technology, partnerships, and community engagement. The WILDLABS Awards provided an opportunity to bring these elements together and demonstrate how innovative tools can support conservation in challenging and remote environments. For that, we remain sincerely and forever grateful.


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